EpiCompare Report
Jun-08-2022
knitr::opts_chunk$set(echo = FALSE)
### Create Output Directory ###
# if save_output = TRUE
if(params$save_output){
outfile_dir <- paste0(params$output_dir,"/EpiCompare_file")
if(!dir.exists(outfile_dir)){
dir.create(outfile_dir, showWarnings = FALSE, recursive = TRUE)
}
}
#### ------ Prepare genome builds ------ ####
# e.g. genome_build <- list(reference="hg19",peakfiles="hg38",blacklist="hg19")
# or... genome_build <- "hg19"
builds <- prepare_genome_builds(genome_build = params$genome_build)
## Standardise all data to hg19 build
output_build <- prepare_output_build(params$genome_build_output)
#### ------ Prepare peaklist(s) ------ ####
# and check that the list is named, if not default filenames are used
peaklist <- prepare_peaklist(peaklist = params$peakfile)
peaklist <- liftover_grlist(grlist = peaklist,
input_build = builds$peaklist,
output_build = output_build)
#### ------ Prepare reference(s) ------ ####
reference <- prepare_reference(reference = params$reference)
reference <- liftover_grlist(grlist = reference,
input_build = builds$reference,
output_build = output_build)
#### ------ Prepare blacklist ------ ####
blacklist <- liftover_grlist(grlist = params$blacklist,
input_build = builds$blacklist,
output_build = output_build)
### Standardise peaklist(s) ###
peaklist_tidy <- tidy_peakfile(peaklist = peaklist,
blacklist = blacklist)
### Standardise reference(s) ###
# and include in peaklist
reference_tidy <- reference
if (!is.null(reference)){
reference_tidy <- tidy_peakfile(peaklist = reference,
blacklist = blacklist)
peaklist_tidy <- c(peaklist_tidy, reference_tidy)
}
### Obtain Genome Annotation ###
txdb <- check_genome_build(genome_build = output_build)
### Dynamic Figure Height ###
fig_height <- fig_length(default_size = 7,
number_of_items = length(peaklist_tidy),
max_items = 10)EpiCompare compares epigenetic datasets for quality control and benchmarking purposes. The report consists of three sections:
- General Metrics: Metrics on peaks (percentage of blacklisted and non-standard peaks, and peak widths) and fragments (duplication rate) of samples.
- Peak Overlap: Percentage and statistical significance of overlapping and non-overlapping peaks. Also includes upset plot.
- Functional Annotation: Functional annotation (ChromHMM, ChIPseeker and enrichment analysis) of peaks. Also includes peak enrichment around TSS.
Input Datasets
- Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP
- Total of 49 peak files:
## [1] "File1: C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2"
## [1] "File2: C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2"
## [1] "File3: C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2"
## [1] "File4: C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2"
## [1] "File5: C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2"
## [1] "File6: C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2"
## [1] "File7: C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR"
## [1] "File8: C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR"
## [1] "File9: C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR"
## [1] "File10: C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR"
## [1] "File11: C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File12: C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File13: C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File14: C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File15: C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR"
## [1] "File16: C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR"
## [1] "File17: C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR"
## [1] "File18: C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR"
## [1] "File19: C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR"
## [1] "File20: C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR"
## [1] "File21: C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File22: C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File23: C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File24: C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File25: C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR"
## [1] "File26: C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR"
## [1] "File27: C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR"
## [1] "File28: C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR"
## [1] "File29: C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR"
## [1] "File30: C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR"
## [1] "File31: TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1"
## [1] "File32: TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2"
## [1] "File33: TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1"
## [1] "File34: TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1"
## [1] "File35: TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1"
## [1] "File36: TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1"
## [1] "File37: TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1"
## [1] "File38: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1"
## [1] "File39: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1"
## [1] "File40: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1"
## [1] "File41: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1"
## [1] "File42: TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1"
## [1] "File43: TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1"
## [1] "File44: TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1"
## [1] "File45: TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1"
## [1] "File46: TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1"
## [1] "File47: TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1"
## [1] "File48: TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1"
## [1] "File49: ENCODE_H3K27me3_ENCFF049HUP"Code
The function call used to create the report.
EpiCompare(peakfiles = list(C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2, C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2, C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2, C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2, C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2, C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2, C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR, C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR, TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1, TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2, TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1, TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1, TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1, TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1, TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1, TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1, TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1, TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1, TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1, TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1, TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1, TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1, ENCODE_H3K27me3_ENCFF049HUP),
genome_build = hg19, hg38, hg19,
genome_build_output = hg19,
blacklist = blacklist,
picard_files = list(),
reference = ENCODE_H3K27me3_ENCFF049HUP,
upset_plot = TRUE,
stat_plot = TRUE,
chromHMM_plot = TRUE,
chromHMM_annotation = "K562",
chipseeker_plot = TRUE,
enrichment_plot = TRUE,
tss_plot = TRUE,
precision_recall_plot = TRUE,
interact = TRUE,
save_output = TRUE,
output_dir = "/Users/schilder/Desktop/CUT_n_TAG/EpiCompare/ENCODE_H3K27me3_ENCFF049HUP")1. General Metrics
Peak Information
Column Description:
- PeakN before tidy: Total number of peaks including those blacklisted and those in non-standard chromosomes.
- Blacklisted peaks removed (%): Percentage of blacklisted peaks in samples. E.g. ENCODE hg19 blacklist includes regions in the hg19 genome that have anomalous and/or unstructured signals independent of the cell-line or experiment.
- Non-standard peaks removed (%): Percentage of peaks in non-standard
and/or mitochondrial chromosomes. Identified using
BRGenomics::tidyChromosomes().
- PeakN after tidy: Total number of peaks after removing those in blacklisted regions and non-standard chromosomes.
NB: EpiCompare uses filtered peakfiles (i.e. datasets after removing peaks in blacklisted regions and non-standard chromosomes)
## --- Running peak_info() ---## Done.| PeakN Before Tidy | Blacklisted Peaks Removed (%) | Non-standard Peaks Removed (%) | PeakN After Tidy | |
|---|---|---|---|---|
| C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | 28083 | 2.480 | 1.91000 | 26854 |
| C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | 39607 | 1.290 | 0.83600 | 38766 |
| C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | 5737 | 10.300 | 5.56000 | 4831 |
| C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | 197469 | 0.447 | 0.42500 | 195749 |
| C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | 15973 | 4.450 | 2.59000 | 14851 |
| C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | 33480 | 2.340 | 1.13000 | 32323 |
| C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | 7353 | 6.880 | 3.10000 | 6620 |
| C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | 23328 | 2.550 | 1.89000 | 22293 |
| C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | 4576 | 3.540 | 2.12000 | 4318 |
| C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | 6522 | 4.940 | 2.61000 | 6031 |
| C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | 11122 | 3.700 | 2.71000 | 10410 |
| C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | 5876 | 2.420 | 1.46000 | 5649 |
| C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | 4095 | 5.620 | 2.59000 | 3760 |
| C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | 65725 | 0.672 | 0.58700 | 64898 |
| C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | 4157 | 5.390 | 2.86000 | 3815 |
| C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | 9412 | 4.240 | 2.89000 | 8742 |
| C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | 6706 | 1.540 | 0.92500 | 6542 |
| C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | 7355 | 3.300 | 1.77000 | 6983 |
| C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | 74196 | 0.721 | 0.60900 | 73210 |
| C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | 6509 | 3.830 | 2.17000 | 6120 |
| C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | 8273 | 2.040 | 1.35000 | 7993 |
| C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | 6340 | 2.020 | 0.99400 | 6150 |
| C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | 6285 | 5.740 | 2.77000 | 5751 |
| C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | 78009 | 0.356 | 0.41700 | 77407 |
| C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | 7123 | 3.800 | 1.95000 | 6714 |
| C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | 8315 | 1.790 | 1.15000 | 8071 |
| C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | 4713 | 1.950 | 0.91200 | 4579 |
| C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | 4072 | 7.420 | 3.56000 | 3626 |
| C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | 69593 | 0.540 | 0.45700 | 68900 |
| C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | 3987 | 9.180 | 4.77000 | 3432 |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | 61464 | 0.236 | 0.01950 | 61319 |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | 116419 | 0.312 | 0.01030 | 116056 |
| TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | 77999 | 0.333 | 0.01540 | 77739 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | 68776 | 0.318 | 0.01740 | 68557 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | 42087 | 0.152 | 0.02850 | 42023 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | 121514 | 0.238 | 0.00988 | 121225 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | 103900 | 0.236 | 0.01150 | 103655 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | 76027 | 0.241 | 0.01580 | 75844 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | 88978 | 0.249 | 0.01350 | 88756 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | 69386 | 0.262 | 0.01730 | 69204 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | 83023 | 0.257 | 0.01450 | 82810 |
| TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | 73454 | 0.317 | 0.01630 | 73221 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | 66575 | 0.424 | 0.01800 | 66293 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | 66193 | 0.224 | 0.01810 | 66045 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | 79191 | 0.516 | 0.01520 | 78782 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | 86061 | 0.464 | 0.01390 | 85662 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | 81669 | 0.307 | 0.01470 | 81418 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | 79023 | 0.248 | 0.01520 | 78827 |
Fragment Information
Metrics on fragments is shown only if Picard summary is provided. See manual for help.
Column Description:
- Mapped_Fragments: Number of mapped read pairs in the file.
- Duplication_Rate: Percentage of mapped sequence that is marked as duplicate.
- Unique_Fragments: Number of mapped sequence that is not marked as duplicate.
Peak widths
Distribution of peak widths in samples
2. Peak Overlap
Percentage Overlap
Percentage of overlapping peaks between samples. Hover over heatmap for percentage values.
N.B. How to interpret heatmap: [Samples in x-axis of heatmap] peaks in [Samples in y-axis of heatmap] peaks
Statistical Significance
Depending on the format of the reference file, EpiCompare outputs different plots:
- Reference dataset has BED6+4 format (peak calling performed with MACS2): EpiCompare generates paired boxplot per sample showing the distribution of -log10(q-value) of reference peaks that are overlapping and non-overlapping with the sample dataset.
- Reference dataset does not have BED6+4 format: EpiCompare generates a barplot of percentage of overlapping sample peaks with the reference, coloured by statistical significance (adjusted p-value) of the overlap.
Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP
Keys:
- Overlap: Sample peaks in Reference peaks
- Unique: Sample peaks not in Reference peaks
Precision-Recall Curves
The first plot shows the balance between precision and recall across multiple peak calling stringency thresholds.
- Precision: Number of sample peaks in reference.
- Recall: Number of reference peaks in sample.
The second plot shows F1 score (a score that combines precision and recall) across the different peak calling calling stringency thresholds.
- F1:
2*(precision*recall) / (precision+recall)
3. Functional Annotation
3.1 ChromHMM
ChromHMM annotates and characterises peaks into different chromatin states. ChromHMM annotations used in EpiCompare were obtained from here.
- Cell-type annotation file used in this analysis: K562
All samples
ChromHMM annotation of individual samples.
Overlap: Sample peaks in Reference peaks
Percentage of Sample peaks found in Reference peaks (Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP)
| query | subject | overlap | total | Percentage | type | peaklist1 | peaklist2 |
|---|---|---|---|---|---|---|---|
| C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 875 | 26854 | 3.26e+00 | precision | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 73 | 38766 | 1.88e-01 | precision | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 11 | 4831 | 2.28e-01 | precision | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 50744 | 195749 | 2.59e+01 | precision | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 12 | 14851 | 8.08e-02 | precision | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 37 | 32323 | 1.14e-01 | precision | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 14 | 6620 | 2.11e-01 | precision | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 878 | 22293 | 3.94e+00 | precision | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3 | 4318 | 6.95e-02 | precision | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 4 | 6031 | 6.63e-02 | precision | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 367 | 10410 | 3.53e+00 | precision | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 16 | 5649 | 2.83e-01 | precision | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 20 | 3760 | 5.32e-01 | precision | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 17786 | 64898 | 2.74e+01 | precision | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 5 | 3815 | 1.31e-01 | precision | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 395 | 8742 | 4.52e+00 | precision | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 16 | 6542 | 2.45e-01 | precision | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 120 | 6983 | 1.72e+00 | precision | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 19899 | 73210 | 2.72e+01 | precision | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 48 | 6120 | 7.84e-01 | precision | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 65 | 7993 | 8.13e-01 | precision | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 9 | 6150 | 1.46e-01 | precision | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6 | 5751 | 1.04e-01 | precision | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 21468 | 77407 | 2.77e+01 | precision | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3 | 6714 | 4.47e-02 | precision | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 18 | 8071 | 2.23e-01 | precision | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 4 | 4579 | 8.74e-02 | precision | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 2 | 3626 | 5.52e-02 | precision | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 19818 | 68900 | 2.88e+01 | precision | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 4 | 3432 | 1.17e-01 | precision | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27me3_ENCFF049HUP | 284 | 61319 | 4.63e-01 | precision | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27me3_ENCFF049HUP | 1996 | 116056 | 1.72e+00 | precision | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 571 | 77739 | 7.35e-01 | precision | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 373 | 68557 | 5.44e-01 | precision | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27me3_ENCFF049HUP | 137 | 42023 | 3.26e-01 | precision | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27me3_ENCFF049HUP | 2673 | 121225 | 2.20e+00 | precision | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27me3_ENCFF049HUP | 1427 | 103655 | 1.38e+00 | precision | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27me3_ENCFF049HUP | 427 | 75844 | 5.63e-01 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27me3_ENCFF049HUP | 883 | 88756 | 9.95e-01 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27me3_ENCFF049HUP | 572 | 69204 | 8.27e-01 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27me3_ENCFF049HUP | 585 | 82810 | 7.06e-01 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27me3_ENCFF049HUP | 377 | 73221 | 5.15e-01 | precision | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27me3_ENCFF049HUP | 22637 | 66293 | 3.41e+01 | precision | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27me3_ENCFF049HUP | 20269 | 66045 | 3.07e+01 | precision | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27me3_ENCFF049HUP | 23163 | 78782 | 2.94e+01 | precision | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27me3_ENCFF049HUP | 24142 | 85662 | 2.82e+01 | precision | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27me3_ENCFF049HUP | 23547 | 81418 | 2.89e+01 | precision | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 22279 | 78827 | 2.83e+01 | precision | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP | 74225 | 74225 | 1.00e+02 | precision | ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | 1128 | 74225 | 1.52e+00 | recall | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | 76 | 74225 | 1.02e-01 | recall | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | 8 | 74225 | 1.08e-02 | recall | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | 48599 | 74225 | 6.55e+01 | recall | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | 8 | 74225 | 1.08e-02 | recall | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | 29 | 74225 | 3.91e-02 | recall | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | 15 | 74225 | 2.02e-02 | recall | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | 1252 | 74225 | 1.69e+00 | recall | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | 3 | 74225 | 4.04e-03 | recall | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | 4 | 74225 | 5.39e-03 | recall | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | 514 | 74225 | 6.92e-01 | recall | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | 25 | 74225 | 3.37e-02 | recall | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | 28 | 74225 | 3.77e-02 | recall | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | 21669 | 74225 | 2.92e+01 | recall | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | 5 | 74225 | 6.74e-03 | recall | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | 565 | 74225 | 7.61e-01 | recall | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | 20 | 74225 | 2.69e-02 | recall | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | 184 | 74225 | 2.48e-01 | recall | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | 25362 | 74225 | 3.42e+01 | recall | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | 68 | 74225 | 9.16e-02 | recall | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | 107 | 74225 | 1.44e-01 | recall | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | 9 | 74225 | 1.21e-02 | recall | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | 7 | 74225 | 9.43e-03 | recall | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | 27352 | 74225 | 3.69e+01 | recall | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | 4 | 74225 | 5.39e-03 | recall | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | 27 | 74225 | 3.64e-02 | recall | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | 5 | 74225 | 6.74e-03 | recall | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | 2 | 74225 | 2.69e-03 | recall | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | 25088 | 74225 | 3.38e+01 | recall | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | 4 | 74225 | 5.39e-03 | recall | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | 333 | 74225 | 4.49e-01 | recall | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | 2666 | 74225 | 3.59e+00 | recall | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | 753 | 74225 | 1.01e+00 | recall | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | 465 | 74225 | 6.26e-01 | recall | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | 144 | 74225 | 1.94e-01 | recall | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | 3654 | 74225 | 4.92e+00 | recall | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | 1907 | 74225 | 2.57e+00 | recall | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | 524 | 74225 | 7.06e-01 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | 1048 | 74225 | 1.41e+00 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | 636 | 74225 | 8.57e-01 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | 734 | 74225 | 9.89e-01 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | 444 | 74225 | 5.98e-01 | recall | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | 52175 | 74225 | 7.03e+01 | recall | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | 30940 | 74225 | 4.17e+01 | recall | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | 51692 | 74225 | 6.96e+01 | recall | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | 55016 | 74225 | 7.41e+01 | recall | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | 42392 | 74225 | 5.71e+01 | recall | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | 38363 | 74225 | 5.17e+01 | recall | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP | 74225 | 74225 | 1.00e+02 | recall | ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP |
ChromHMM annotation of sample peaks found in reference peaks.
Overlap: Reference peaks in Sample peaks
Percentage of Reference peaks found in Sample peaks (Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP)
| query | subject | overlap | total | Percentage | type | peaklist1 | peaklist2 |
|---|---|---|---|---|---|---|---|
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | 1128 | 74225 | 1.52e+00 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | 76 | 74225 | 1.02e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | 8 | 74225 | 1.08e-02 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | 48599 | 74225 | 6.55e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | 8 | 74225 | 1.08e-02 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | 29 | 74225 | 3.91e-02 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | 15 | 74225 | 2.02e-02 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | 1252 | 74225 | 1.69e+00 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | 3 | 74225 | 4.04e-03 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | 4 | 74225 | 5.39e-03 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | 514 | 74225 | 6.92e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | 25 | 74225 | 3.37e-02 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | 28 | 74225 | 3.77e-02 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | 21669 | 74225 | 2.92e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | 5 | 74225 | 6.74e-03 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | 565 | 74225 | 7.61e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | 20 | 74225 | 2.69e-02 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | 184 | 74225 | 2.48e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | 25362 | 74225 | 3.42e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | 68 | 74225 | 9.16e-02 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | 107 | 74225 | 1.44e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | 9 | 74225 | 1.21e-02 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | 7 | 74225 | 9.43e-03 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | 27352 | 74225 | 3.69e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | 4 | 74225 | 5.39e-03 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | 27 | 74225 | 3.64e-02 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | 5 | 74225 | 6.74e-03 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | 2 | 74225 | 2.69e-03 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | 25088 | 74225 | 3.38e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | 4 | 74225 | 5.39e-03 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | 333 | 74225 | 4.49e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | 2666 | 74225 | 3.59e+00 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | 753 | 74225 | 1.01e+00 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | 465 | 74225 | 6.26e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | 144 | 74225 | 1.94e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | 3654 | 74225 | 4.92e+00 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | 1907 | 74225 | 2.57e+00 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | 524 | 74225 | 7.06e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | 1048 | 74225 | 1.41e+00 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | 636 | 74225 | 8.57e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | 734 | 74225 | 9.89e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | 444 | 74225 | 5.98e-01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | 52175 | 74225 | 7.03e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | 30940 | 74225 | 4.17e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | 51692 | 74225 | 6.96e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | 55016 | 74225 | 7.41e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | 42392 | 74225 | 5.71e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | 38363 | 74225 | 5.17e+01 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP | 74225 | 74225 | 1.00e+02 | precision | ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 875 | 26854 | 3.26e+00 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 73 | 38766 | 1.88e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 11 | 4831 | 2.28e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 50744 | 195749 | 2.59e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 12 | 14851 | 8.08e-02 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 37 | 32323 | 1.14e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 |
| C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 14 | 6620 | 2.11e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 878 | 22293 | 3.94e+00 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3 | 4318 | 6.95e-02 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 4 | 6031 | 6.63e-02 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 367 | 10410 | 3.53e+00 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 16 | 5649 | 2.83e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 20 | 3760 | 5.32e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 17786 | 64898 | 2.74e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 5 | 3815 | 1.31e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 395 | 8742 | 4.52e+00 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 16 | 6542 | 2.45e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 120 | 6983 | 1.72e+00 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 19899 | 73210 | 2.72e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 48 | 6120 | 7.84e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 65 | 7993 | 8.13e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 9 | 6150 | 1.46e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6 | 5751 | 1.04e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 21468 | 77407 | 2.77e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3 | 6714 | 4.47e-02 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 18 | 8071 | 2.23e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 4 | 4579 | 8.74e-02 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 2 | 3626 | 5.52e-02 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 19818 | 68900 | 2.88e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 4 | 3432 | 1.17e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27me3_ENCFF049HUP | 284 | 61319 | 4.63e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27me3_ENCFF049HUP | 1996 | 116056 | 1.72e+00 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 |
| TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 571 | 77739 | 7.35e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 373 | 68557 | 5.44e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27me3_ENCFF049HUP | 137 | 42023 | 3.26e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27me3_ENCFF049HUP | 2673 | 121225 | 2.20e+00 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27me3_ENCFF049HUP | 1427 | 103655 | 1.38e+00 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27me3_ENCFF049HUP | 427 | 75844 | 5.63e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27me3_ENCFF049HUP | 883 | 88756 | 9.95e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27me3_ENCFF049HUP | 572 | 69204 | 8.27e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27me3_ENCFF049HUP | 585 | 82810 | 7.06e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 |
| TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27me3_ENCFF049HUP | 377 | 73221 | 5.15e-01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27me3_ENCFF049HUP | 22637 | 66293 | 3.41e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27me3_ENCFF049HUP | 20269 | 66045 | 3.07e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27me3_ENCFF049HUP | 23163 | 78782 | 2.94e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27me3_ENCFF049HUP | 24142 | 85662 | 2.82e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27me3_ENCFF049HUP | 23547 | 81418 | 2.89e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 22279 | 78827 | 2.83e+01 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP | 74225 | 74225 | 1.00e+02 | recall | ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP |
ChromHMM annotation of reference peaks found in sample peaks.
Unique: Sample peaks not in Reference peaks
Percentage of sample peaks not found in reference peaks (Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP)
| query | subject | overlap | total | Percentage | type | peaklist1 | peaklist2 |
|---|---|---|---|---|---|---|---|
| C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 25979 | 26854 | 96.7 | precision | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 38693 | 38766 | 99.8 | precision | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 4820 | 4831 | 99.8 | precision | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 145005 | 195749 | 74.1 | precision | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 14839 | 14851 | 99.9 | precision | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 32286 | 32323 | 99.9 | precision | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6606 | 6620 | 99.8 | precision | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 21415 | 22293 | 96.1 | precision | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 4315 | 4318 | 99.9 | precision | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6027 | 6031 | 99.9 | precision | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 10043 | 10410 | 96.5 | precision | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 5633 | 5649 | 99.7 | precision | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3740 | 3760 | 99.5 | precision | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 47112 | 64898 | 72.6 | precision | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3810 | 3815 | 99.9 | precision | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 8347 | 8742 | 95.5 | precision | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6526 | 6542 | 99.8 | precision | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6863 | 6983 | 98.3 | precision | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 53311 | 73210 | 72.8 | precision | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6072 | 6120 | 99.2 | precision | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 7928 | 7993 | 99.2 | precision | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6141 | 6150 | 99.9 | precision | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 5745 | 5751 | 99.9 | precision | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 55939 | 77407 | 72.3 | precision | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6711 | 6714 | 100.0 | precision | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 8053 | 8071 | 99.8 | precision | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 4575 | 4579 | 99.9 | precision | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3624 | 3626 | 99.9 | precision | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 49082 | 68900 | 71.2 | precision | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3428 | 3432 | 99.9 | precision | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27me3_ENCFF049HUP | 61035 | 61319 | 99.5 | precision | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27me3_ENCFF049HUP | 114060 | 116056 | 98.3 | precision | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 77168 | 77739 | 99.3 | precision | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 68184 | 68557 | 99.5 | precision | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27me3_ENCFF049HUP | 41886 | 42023 | 99.7 | precision | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27me3_ENCFF049HUP | 118552 | 121225 | 97.8 | precision | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27me3_ENCFF049HUP | 102228 | 103655 | 98.6 | precision | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27me3_ENCFF049HUP | 75417 | 75844 | 99.4 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27me3_ENCFF049HUP | 87873 | 88756 | 99.0 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27me3_ENCFF049HUP | 68632 | 69204 | 99.2 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27me3_ENCFF049HUP | 82225 | 82810 | 99.3 | precision | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27me3_ENCFF049HUP | 72844 | 73221 | 99.5 | precision | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27me3_ENCFF049HUP | 43656 | 66293 | 65.9 | precision | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27me3_ENCFF049HUP | 45776 | 66045 | 69.3 | precision | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27me3_ENCFF049HUP | 55619 | 78782 | 70.6 | precision | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27me3_ENCFF049HUP | 61520 | 85662 | 71.8 | precision | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27me3_ENCFF049HUP | 57871 | 81418 | 71.1 | precision | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 56548 | 78827 | 71.7 | precision | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP | 0 | 74225 | 0.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | 73097 | 74225 | 98.5 | recall | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | 74149 | 74225 | 99.9 | recall | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | 74217 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | 25626 | 74225 | 34.5 | recall | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | 74217 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | 74196 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | 74210 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | 72973 | 74225 | 98.3 | recall | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | 74222 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | 74221 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | 73711 | 74225 | 99.3 | recall | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | 74200 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | 74197 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | 52556 | 74225 | 70.8 | recall | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | 74220 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | 73660 | 74225 | 99.2 | recall | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | 74205 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | 74041 | 74225 | 99.8 | recall | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | 48863 | 74225 | 65.8 | recall | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | 74157 | 74225 | 99.9 | recall | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | 74118 | 74225 | 99.9 | recall | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | 74216 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | 74218 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | 46873 | 74225 | 63.1 | recall | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | 74221 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | 74198 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | 74220 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | 74223 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | 49137 | 74225 | 66.2 | recall | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | 74221 | 74225 | 100.0 | recall | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | 73892 | 74225 | 99.6 | recall | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | 71559 | 74225 | 96.4 | recall | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | 73472 | 74225 | 99.0 | recall | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | 73760 | 74225 | 99.4 | recall | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | 74081 | 74225 | 99.8 | recall | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | 70571 | 74225 | 95.1 | recall | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | 72318 | 74225 | 97.4 | recall | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | 73701 | 74225 | 99.3 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | 73177 | 74225 | 98.6 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | 73589 | 74225 | 99.1 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | 73491 | 74225 | 99.0 | recall | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | 73781 | 74225 | 99.4 | recall | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | 22050 | 74225 | 29.7 | recall | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | 43285 | 74225 | 58.3 | recall | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | 22533 | 74225 | 30.4 | recall | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | 19209 | 74225 | 25.9 | recall | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | 31833 | 74225 | 42.9 | recall | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | 35862 | 74225 | 48.3 | recall | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27me3_ENCFF049HUP |
| ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP | 0 | 74225 | 0.0 | recall | ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP |
ChromHMM annotation of sample peaks not found in reference peaks.
Unique: Reference peaks not in Sample peaks
Percentage of reference peaks not found in sample peaks (Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP)
| query | subject | overlap | total | Percentage | type | peaklist1 | peaklist2 |
|---|---|---|---|---|---|---|---|
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | 73097 | 74225 | 98.5 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | 74149 | 74225 | 99.9 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | 74217 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | 25626 | 74225 | 34.5 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | 74217 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | 74196 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | 74210 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | 72973 | 74225 | 98.3 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | 74222 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | 74221 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | 73711 | 74225 | 99.3 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | 74200 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | 74197 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | 52556 | 74225 | 70.8 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | 74220 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | 73660 | 74225 | 99.2 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | 74205 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | 74041 | 74225 | 99.8 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | 48863 | 74225 | 65.8 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | 74157 | 74225 | 99.9 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | 74118 | 74225 | 99.9 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | 74216 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | 74218 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | 46873 | 74225 | 63.1 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | 74221 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | 74198 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | 74220 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | 74223 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | 49137 | 74225 | 66.2 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | 74221 | 74225 | 100.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | 73892 | 74225 | 99.6 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | 71559 | 74225 | 96.4 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | 73472 | 74225 | 99.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | 73760 | 74225 | 99.4 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | 74081 | 74225 | 99.8 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | 70571 | 74225 | 95.1 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | 72318 | 74225 | 97.4 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | 73701 | 74225 | 99.3 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | 73177 | 74225 | 98.6 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | 73589 | 74225 | 99.1 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | 73491 | 74225 | 99.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | 73781 | 74225 | 99.4 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | 22050 | 74225 | 29.7 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | 43285 | 74225 | 58.3 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | 22533 | 74225 | 30.4 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | 19209 | 74225 | 25.9 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | 31833 | 74225 | 42.9 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | 35862 | 74225 | 48.3 | precision | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP | 0 | 74225 | 0.0 | precision | ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP |
| C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 25979 | 26854 | 96.7 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 38693 | 38766 | 99.8 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 4820 | 4831 | 99.8 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 145005 | 195749 | 74.1 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 14839 | 14851 | 99.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 |
| C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 | ENCODE_H3K27me3_ENCFF049HUP | 32286 | 32323 | 99.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 |
| C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6606 | 6620 | 99.8 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 21415 | 22293 | 96.1 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 4315 | 4318 | 99.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6027 | 6031 | 99.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR |
| C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 10043 | 10410 | 96.5 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 5633 | 5649 | 99.7 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3740 | 3760 | 99.5 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 47112 | 64898 | 72.6 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3810 | 3815 | 99.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 8347 | 8742 | 95.5 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6526 | 6542 | 99.8 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6863 | 6983 | 98.3 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 53311 | 73210 | 72.8 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6072 | 6120 | 99.2 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 7928 | 7993 | 99.2 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6141 | 6150 | 99.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 5745 | 5751 | 99.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 55939 | 77407 | 72.3 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 6711 | 6714 | 100.0 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 8053 | 8071 | 99.8 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 4575 | 4579 | 99.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3624 | 3626 | 99.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 49082 | 68900 | 71.2 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR |
| C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR | ENCODE_H3K27me3_ENCFF049HUP | 3428 | 3432 | 99.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 | ENCODE_H3K27me3_ENCFF049HUP | 61035 | 61319 | 99.5 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 |
| TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 | ENCODE_H3K27me3_ENCFF049HUP | 114060 | 116056 | 98.3 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 |
| TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 77168 | 77739 | 99.3 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 68184 | 68557 | 99.5 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 |
| TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 | ENCODE_H3K27me3_ENCFF049HUP | 41886 | 42023 | 99.7 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 | ENCODE_H3K27me3_ENCFF049HUP | 118552 | 121225 | 97.8 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 |
| TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 | ENCODE_H3K27me3_ENCFF049HUP | 102228 | 103655 | 98.6 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 | ENCODE_H3K27me3_ENCFF049HUP | 75417 | 75844 | 99.4 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 | ENCODE_H3K27me3_ENCFF049HUP | 87873 | 88756 | 99.0 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 | ENCODE_H3K27me3_ENCFF049HUP | 68632 | 69204 | 99.2 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 |
| TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 | ENCODE_H3K27me3_ENCFF049HUP | 82225 | 82810 | 99.3 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 |
| TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 | ENCODE_H3K27me3_ENCFF049HUP | 72844 | 73221 | 99.5 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 | ENCODE_H3K27me3_ENCFF049HUP | 43656 | 66293 | 65.9 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 | ENCODE_H3K27me3_ENCFF049HUP | 45776 | 66045 | 69.3 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 | ENCODE_H3K27me3_ENCFF049HUP | 55619 | 78782 | 70.6 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 | ENCODE_H3K27me3_ENCFF049HUP | 61520 | 85662 | 71.8 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 | ENCODE_H3K27me3_ENCFF049HUP | 57871 | 81418 | 71.1 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 |
| TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 | ENCODE_H3K27me3_ENCFF049HUP | 56548 | 78827 | 71.7 | recall | ENCODE_H3K27me3_ENCFF049HUP | TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 |
| ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP | 0 | 74225 | 0.0 | recall | ENCODE_H3K27me3_ENCFF049HUP | ENCODE_H3K27me3_ENCFF049HUP |
ChromHMM annotation of reference peaks not found in sample peaks.
3.2 ChIPseeker
EpiCompare uses ChIPseeker::annotatePeak() to annotate
peaks with the nearest gene and genomic regions where the peak is
located. The peaks are annotated with genes taken from human genome
annotations (hg19 or hg38) provided by Bioconductor.
3.3 Functional Enrichment Analysis
EpiCompare performs KEGG pathway and GO enrichment analysis using
clusterProfiler. ChIPseeker::annotatePeak() is
first used to assign peaks to nearest genes. Biological themes amongst
the genes are identified using ontologies (KEGG and GO). The peaks are
annotated with genes taken from annotations of human genome (hg19 or
hg38) provided by Bioconductor.
KEGG
GO
3.4 Peak Frequency around TSS
This plots peaks that are mapping to transcriptional start sites (TSS). TSS regions are defined as the flanking sequence of the TSS sites. The frequency of peaks in downstream (-3000bp) and upstream (+3000bp) of TSS is plotted. Faint color line around the main frequency line represents the 95% confidence interval estimated by bootstrap method.
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4. Session Info
## R version 4.2.0 (2022-04-22)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Monterey 12.3.1
##
## Matrix products: default
## LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
##
## locale:
## [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] rtracklayer_1.56.0 GenomicRanges_1.48.0 GenomeInfoDb_1.32.2 IRanges_2.30.0 S4Vectors_0.34.0
## [6] BiocGenerics_0.42.0 EpiCompare_0.99.20 PeakyFinders_0.99.1
##
## loaded via a namespace (and not attached):
## [1] utf8_1.2.2 reticulate_1.25
## [3] R.utils_2.11.0 tidyselect_1.1.2
## [5] htmlwidgets_1.5.4 RSQLite_2.2.14
## [7] AnnotationDbi_1.58.0 grid_4.2.0
## [9] BiocParallel_1.30.3 scatterpie_0.1.7
## [11] munsell_0.5.0 codetools_0.2-18
## [13] colorspace_2.0-3 GOSemSim_2.22.0
## [15] Biobase_2.56.0 filelock_1.0.2
## [17] highr_0.9 knitr_1.39
## [19] MACSr_1.4.0 rstudioapi_0.13
## [21] DOSE_3.22.0 labeling_0.4.2
## [23] MatrixGenerics_1.8.0 GenomeInfoDbData_1.2.8
## [25] polyclip_1.10-0 seqPattern_1.28.0
## [27] bit64_4.0.5 farver_2.1.0
## [29] downloader_0.4 rprojroot_2.0.3
## [31] basilisk_1.8.0 vctrs_0.4.1
## [33] treeio_1.20.0 generics_0.1.2
## [35] xfun_0.31 BiocFileCache_2.4.0
## [37] regioneR_1.28.0 R6_2.5.1
## [39] graphlayouts_0.8.0 locfit_1.5-9.5
## [41] bitops_1.0-7 BRGenomics_1.8.0
## [43] cachem_1.0.6 fgsea_1.22.0
## [45] gridGraphics_0.5-1 DelayedArray_0.22.0
## [47] assertthat_0.2.1 vroom_1.5.7
## [49] promises_1.2.0.1 BiocIO_1.6.0
## [51] scales_1.2.0 ggraph_2.0.5
## [53] enrichplot_1.16.1 gtable_0.3.0
## [55] tidygraph_1.2.1 rlang_1.0.2
## [57] genefilter_1.78.0 splines_4.2.0
## [59] lazyeval_0.2.2 impute_1.70.0
## [61] GEOquery_2.64.2 BiocManager_1.30.18
## [63] yaml_2.3.5 reshape2_1.4.4
## [65] crosstalk_1.2.0 GenomicFeatures_1.48.3
## [67] httpuv_1.6.5 qvalue_2.28.0
## [69] clusterProfiler_4.4.2 tools_4.2.0
## [71] gridBase_0.4-7 ggplotify_0.1.0
## [73] ggplot2_3.3.6 ellipsis_0.3.2
## [75] gplots_3.1.3 jquerylib_0.1.4
## [77] RColorBrewer_1.1-3 Rcpp_1.0.8.3
## [79] plyr_1.8.7 progress_1.2.2
## [81] zlibbioc_1.42.0 purrr_0.3.4
## [83] RCurl_1.98-1.6 basilisk.utils_1.8.0
## [85] prettyunits_1.1.1 viridis_0.6.2
## [87] SummarizedExperiment_1.26.1 ggrepel_0.9.1
## [89] here_1.0.1 magrittr_2.0.3
## [91] data.table_1.14.2 DO.db_2.9
## [93] matrixStats_0.62.0 hms_1.1.1
## [95] patchwork_1.1.1 mime_0.12
## [97] evaluate_0.15 xtable_1.8-4
## [99] XML_3.99-0.9 gridExtra_2.3
## [101] compiler_4.2.0 biomaRt_2.52.0
## [103] tibble_3.1.7 KernSmooth_2.23-20
## [105] crayon_1.5.1 shadowtext_0.1.2
## [107] R.oo_1.24.0 htmltools_0.5.2
## [109] ggfun_0.0.6 later_1.3.0
## [111] tzdb_0.3.0 tidyr_1.2.0
## [113] geneplotter_1.74.0 aplot_0.1.6
## [115] DBI_1.1.2 genomation_1.28.0
## [117] tweenr_1.0.2 ExperimentHub_2.4.0
## [119] ChIPseeker_1.32.0 dbplyr_2.2.0
## [121] MASS_7.3-57 rappdirs_0.3.3
## [123] boot_1.3-28 Matrix_1.4-1
## [125] readr_2.1.2 piggyback_0.1.3
## [127] cli_3.3.0 R.methodsS3_1.8.1
## [129] parallel_4.2.0 igraph_1.3.1
## [131] pkgconfig_2.0.3 TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
## [133] GenomicAlignments_1.32.0 dir.expiry_1.4.0
## [135] plotly_4.10.0 xml2_1.3.3
## [137] ggtree_3.4.0 annotate_1.74.0
## [139] bslib_0.3.1 XVector_0.36.0
## [141] yulab.utils_0.0.4 stringr_1.4.0
## [143] digest_0.6.29 Biostrings_2.64.0
## [145] rmarkdown_2.14 fastmatch_1.1-3
## [147] tidytree_0.3.9 restfulr_0.0.14
## [149] curl_4.3.2 gtools_3.9.2.1
## [151] shiny_1.7.1 Rsamtools_2.12.0
## [153] rjson_0.2.21 lifecycle_1.0.1
## [155] nlme_3.1-157 jsonlite_1.8.0
## [157] viridisLite_0.4.0 limma_3.52.1
## [159] BSgenome_1.64.0 fansi_1.0.3
## [161] pillar_1.7.0 lattice_0.20-45
## [163] plotrix_3.8-2 KEGGREST_1.36.0
## [165] fastmap_1.1.0 httr_1.4.3
## [167] survival_3.3-1 GO.db_3.15.0
## [169] interactiveDisplayBase_1.34.0 glue_1.6.2
## [171] UpSetR_1.4.0 png_0.1-7
## [173] BiocVersion_3.15.2 bit_4.0.4
## [175] sass_0.4.1 ggforce_0.3.3
## [177] stringi_1.7.6 blob_1.2.3
## [179] org.Hs.eg.db_3.15.0 DESeq2_1.36.0
## [181] AnnotationHub_3.4.0 caTools_1.18.2
## [183] memoise_2.0.1 dplyr_1.0.9
## [185] ape_5.6-2