knitr::opts_chunk$set(echo = FALSE)
### Create Output Directory ###
# if save_output = TRUE
if(params$save_output){
  outfile_dir <- paste0(params$output_dir,"/EpiCompare_file")
  if(!dir.exists(outfile_dir)){
    dir.create(outfile_dir, showWarnings = FALSE, recursive = TRUE)
  }
}

#### ------ Prepare genome builds ------ ####
# e.g. genome_build <- list(reference="hg19",peakfiles="hg38",blacklist="hg19")
# or... genome_build <- "hg19"
builds <- prepare_genome_builds(genome_build = params$genome_build)
## Standardise all data to hg19 build 
output_build <- prepare_output_build(params$genome_build_output)

#### ------ Prepare peaklist(s) ------ ####
# and check that the list is named, if not default filenames are used 
peaklist <- prepare_peaklist(peaklist = params$peakfile) 
peaklist <- liftover_grlist(grlist = peaklist, 
                            input_build = builds$peaklist,
                            output_build = output_build)

#### ------ Prepare reference(s) ------ ####
reference <- prepare_reference(reference = params$reference)
reference <- liftover_grlist(grlist = reference, 
                            input_build = builds$reference,
                            output_build = output_build)

#### ------ Prepare blacklist ------ ####
blacklist <- liftover_grlist(grlist = params$blacklist,
                             input_build = builds$blacklist, 
                             output_build = output_build) 

### Standardise peaklist(s) ###
peaklist_tidy <- tidy_peakfile(peaklist = peaklist,
                               blacklist = blacklist)

### Standardise reference(s) ###
# and include in peaklist
reference_tidy <- reference
if (!is.null(reference)){
  reference_tidy <- tidy_peakfile(peaklist = reference,
                                  blacklist = blacklist)
  peaklist_tidy <- c(peaklist_tidy, reference_tidy)
}

### Obtain Genome Annotation ### 
txdb <- check_genome_build(genome_build = output_build)

### Dynamic Figure Height ###  
fig_height <- fig_length(default_size = 7,
                         number_of_items = length(peaklist_tidy),
                         max_items = 10)

EpiCompare compares epigenetic datasets for quality control and benchmarking purposes. The report consists of three sections:

  1. General Metrics: Metrics on peaks (percentage of blacklisted and non-standard peaks, and peak widths) and fragments (duplication rate) of samples.
  2. Peak Overlap: Percentage and statistical significance of overlapping and non-overlapping peaks. Also includes upset plot.
  3. Functional Annotation: Functional annotation (ChromHMM, ChIPseeker and enrichment analysis) of peaks. Also includes peak enrichment around TSS.

Input Datasets
  • Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP
  • Total of 49 peak files:
## [1] "File1: C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2"
## [1] "File2: C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2"
## [1] "File3: C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2"
## [1] "File4: C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2"
## [1] "File5: C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2"
## [1] "File6: C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2"
## [1] "File7: C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR"
## [1] "File8: C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR"
## [1] "File9: C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR"
## [1] "File10: C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR"
## [1] "File11: C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File12: C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File13: C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File14: C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR"
## [1] "File15: C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR"
## [1] "File16: C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR"
## [1] "File17: C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR"
## [1] "File18: C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR"
## [1] "File19: C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR"
## [1] "File20: C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR"
## [1] "File21: C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File22: C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File23: C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File24: C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR"
## [1] "File25: C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR"
## [1] "File26: C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR"
## [1] "File27: C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR"
## [1] "File28: C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR"
## [1] "File29: C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR"
## [1] "File30: C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR"
## [1] "File31: TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1"
## [1] "File32: TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2"
## [1] "File33: TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1"
## [1] "File34: TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1"
## [1] "File35: TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1"
## [1] "File36: TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1"
## [1] "File37: TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1"
## [1] "File38: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1"
## [1] "File39: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1"
## [1] "File40: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1"
## [1] "File41: TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1"
## [1] "File42: TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1"
## [1] "File43: TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1"
## [1] "File44: TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1"
## [1] "File45: TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1"
## [1] "File46: TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1"
## [1] "File47: TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1"
## [1] "File48: TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1"
## [1] "File49: ENCODE_H3K27me3_ENCFF049HUP"
Code

The function call used to create the report.

EpiCompare(peakfiles = list(C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2, C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2, C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2, C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2, C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2, C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2, C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR, C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR, C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR, C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR, C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR, TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1, TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2, TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1, TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1, TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1, TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1, TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1, TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1, TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1, TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1, TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1, TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1, TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1, TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1, TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1, ENCODE_H3K27me3_ENCFF049HUP),
           genome_build = hg19, hg38, hg19,
           genome_build_output = hg19,
           blacklist = blacklist,
           picard_files = list(),
           reference = ENCODE_H3K27me3_ENCFF049HUP,
           upset_plot = TRUE,
           stat_plot = TRUE,
           chromHMM_plot = TRUE,
           chromHMM_annotation = "K562",
           chipseeker_plot = TRUE,
           enrichment_plot = TRUE,
           tss_plot = TRUE,
           precision_recall_plot = TRUE,
           interact = TRUE,
           save_output = TRUE,
           output_dir = "/Users/schilder/Desktop/CUT_n_TAG/EpiCompare/ENCODE_H3K27me3_ENCFF049HUP")

1. General Metrics

Peak Information

Column Description:

  • PeakN before tidy: Total number of peaks including those blacklisted and those in non-standard chromosomes.
  • Blacklisted peaks removed (%): Percentage of blacklisted peaks in samples. E.g. ENCODE hg19 blacklist includes regions in the hg19 genome that have anomalous and/or unstructured signals independent of the cell-line or experiment.
  • Non-standard peaks removed (%): Percentage of peaks in non-standard and/or mitochondrial chromosomes. Identified using BRGenomics::tidyChromosomes().
  • PeakN after tidy: Total number of peaks after removing those in blacklisted regions and non-standard chromosomes.

NB: EpiCompare uses filtered peakfiles (i.e. datasets after removing peaks in blacklisted regions and non-standard chromosomes)


## --- Running peak_info() ---
## Done.
PeakN Before Tidy Blacklisted Peaks Removed (%) Non-standard Peaks Removed (%) PeakN After Tidy
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 28083 2.480 1.91000 26854
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 39607 1.290 0.83600 38766
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 5737 10.300 5.56000 4831
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 197469 0.447 0.42500 195749
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 15973 4.450 2.59000 14851
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 33480 2.340 1.13000 32323
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR 7353 6.880 3.10000 6620
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR 23328 2.550 1.89000 22293
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR 4576 3.540 2.12000 4318
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR 6522 4.940 2.61000 6031
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR 11122 3.700 2.71000 10410
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR 5876 2.420 1.46000 5649
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR 4095 5.620 2.59000 3760
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR 65725 0.672 0.58700 64898
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR 4157 5.390 2.86000 3815
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR 9412 4.240 2.89000 8742
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR 6706 1.540 0.92500 6542
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR 7355 3.300 1.77000 6983
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR 74196 0.721 0.60900 73210
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR 6509 3.830 2.17000 6120
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR 8273 2.040 1.35000 7993
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR 6340 2.020 0.99400 6150
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR 6285 5.740 2.77000 5751
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR 78009 0.356 0.41700 77407
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR 7123 3.800 1.95000 6714
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR 8315 1.790 1.15000 8071
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR 4713 1.950 0.91200 4579
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR 4072 7.420 3.56000 3626
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR 69593 0.540 0.45700 68900
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR 3987 9.180 4.77000 3432
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 61464 0.236 0.01950 61319
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 116419 0.312 0.01030 116056
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 77999 0.333 0.01540 77739
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 68776 0.318 0.01740 68557
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 42087 0.152 0.02850 42023
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 121514 0.238 0.00988 121225
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 103900 0.236 0.01150 103655
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 76027 0.241 0.01580 75844
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 88978 0.249 0.01350 88756
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 69386 0.262 0.01730 69204
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 83023 0.257 0.01450 82810
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 73454 0.317 0.01630 73221
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 66575 0.424 0.01800 66293
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 66193 0.224 0.01810 66045
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 79191 0.516 0.01520 78782
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 86061 0.464 0.01390 85662
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 81669 0.307 0.01470 81418
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 79023 0.248 0.01520 78827

Fragment Information

Metrics on fragments is shown only if Picard summary is provided. See manual for help.

Column Description:

  • Mapped_Fragments: Number of mapped read pairs in the file.
  • Duplication_Rate: Percentage of mapped sequence that is marked as duplicate.
  • Unique_Fragments: Number of mapped sequence that is not marked as duplicate.



Peak widths

Distribution of peak widths in samples



2. Peak Overlap

Percentage Overlap

Percentage of overlapping peaks between samples. Hover over heatmap for percentage values.

N.B. How to interpret heatmap: [Samples in x-axis of heatmap] peaks in [Samples in y-axis of heatmap] peaks



Upset Plot

Upset plot of overlapping peaks between samples. See here on how to interpret the plot.


Statistical Significance

Depending on the format of the reference file, EpiCompare outputs different plots:

  • Reference dataset has BED6+4 format (peak calling performed with MACS2): EpiCompare generates paired boxplot per sample showing the distribution of -log10(q-value) of reference peaks that are overlapping and non-overlapping with the sample dataset.
  • Reference dataset does not have BED6+4 format: EpiCompare generates a barplot of percentage of overlapping sample peaks with the reference, coloured by statistical significance (adjusted p-value) of the overlap.

Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP

Keys:

  • Overlap: Sample peaks in Reference peaks
  • Unique: Sample peaks not in Reference peaks



Precision-Recall Curves

The first plot shows the balance between precision and recall across multiple peak calling stringency thresholds.

  • Precision: Number of sample peaks in reference.
  • Recall: Number of reference peaks in sample.

The second plot shows F1 score (a score that combines precision and recall) across the different peak calling calling stringency thresholds.

  • F1: 2*(precision*recall) / (precision+recall)


3. Functional Annotation

3.1 ChromHMM

ChromHMM annotates and characterises peaks into different chromatin states. ChromHMM annotations used in EpiCompare were obtained from here.

  • Cell-type annotation file used in this analysis: K562

All samples

ChromHMM annotation of individual samples.

Overlap: Sample peaks in Reference peaks

Percentage of Sample peaks found in Reference peaks (Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP)

query subject overlap total Percentage type peaklist1 peaklist2
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 875 26854 3.26e+00 precision C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 73 38766 1.88e-01 precision C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 11 4831 2.28e-01 precision C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 50744 195749 2.59e+01 precision C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 12 14851 8.08e-02 precision C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27me3_ENCFF049HUP 37 32323 1.14e-01 precision C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 14 6620 2.11e-01 precision C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 878 22293 3.94e+00 precision C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 3 4318 6.95e-02 precision C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 4 6031 6.63e-02 precision C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 367 10410 3.53e+00 precision C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 16 5649 2.83e-01 precision C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 20 3760 5.32e-01 precision C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 17786 64898 2.74e+01 precision C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 5 3815 1.31e-01 precision C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 395 8742 4.52e+00 precision C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 16 6542 2.45e-01 precision C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 120 6983 1.72e+00 precision C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 19899 73210 2.72e+01 precision C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 48 6120 7.84e-01 precision C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 65 7993 8.13e-01 precision C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 9 6150 1.46e-01 precision C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6 5751 1.04e-01 precision C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 21468 77407 2.77e+01 precision C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 3 6714 4.47e-02 precision C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 18 8071 2.23e-01 precision C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 4 4579 8.74e-02 precision C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 2 3626 5.52e-02 precision C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 19818 68900 2.88e+01 precision C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 4 3432 1.17e-01 precision C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27me3_ENCFF049HUP 284 61319 4.63e-01 precision TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27me3_ENCFF049HUP 1996 116056 1.72e+00 precision TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP 571 77739 7.35e-01 precision TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP 373 68557 5.44e-01 precision TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27me3_ENCFF049HUP 137 42023 3.26e-01 precision TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27me3_ENCFF049HUP 2673 121225 2.20e+00 precision TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27me3_ENCFF049HUP 1427 103655 1.38e+00 precision TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27me3_ENCFF049HUP 427 75844 5.63e-01 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27me3_ENCFF049HUP 883 88756 9.95e-01 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27me3_ENCFF049HUP 572 69204 8.27e-01 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27me3_ENCFF049HUP 585 82810 7.06e-01 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27me3_ENCFF049HUP 377 73221 5.15e-01 precision TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27me3_ENCFF049HUP 22637 66293 3.41e+01 precision TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27me3_ENCFF049HUP 20269 66045 3.07e+01 precision TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27me3_ENCFF049HUP 23163 78782 2.94e+01 precision TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27me3_ENCFF049HUP 24142 85662 2.82e+01 precision TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27me3_ENCFF049HUP 23547 81418 2.89e+01 precision TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27me3_ENCFF049HUP 22279 78827 2.83e+01 precision TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP 74225 74225 1.00e+02 precision ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 1128 74225 1.52e+00 recall C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 76 74225 1.02e-01 recall C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 8 74225 1.08e-02 recall C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 48599 74225 6.55e+01 recall C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 8 74225 1.08e-02 recall C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 29 74225 3.91e-02 recall C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR 15 74225 2.02e-02 recall C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR 1252 74225 1.69e+00 recall C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR 3 74225 4.04e-03 recall C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR 4 74225 5.39e-03 recall C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR 514 74225 6.92e-01 recall C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR 25 74225 3.37e-02 recall C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR 28 74225 3.77e-02 recall C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR 21669 74225 2.92e+01 recall C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR 5 74225 6.74e-03 recall C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR 565 74225 7.61e-01 recall C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR 20 74225 2.69e-02 recall C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR 184 74225 2.48e-01 recall C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR 25362 74225 3.42e+01 recall C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR 68 74225 9.16e-02 recall C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR 107 74225 1.44e-01 recall C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR 9 74225 1.21e-02 recall C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR 7 74225 9.43e-03 recall C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR 27352 74225 3.69e+01 recall C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR 4 74225 5.39e-03 recall C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR 27 74225 3.64e-02 recall C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR 5 74225 6.74e-03 recall C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR 2 74225 2.69e-03 recall C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR 25088 74225 3.38e+01 recall C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR 4 74225 5.39e-03 recall C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 333 74225 4.49e-01 recall TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 2666 74225 3.59e+00 recall TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 753 74225 1.01e+00 recall TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 465 74225 6.26e-01 recall TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 144 74225 1.94e-01 recall TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 3654 74225 4.92e+00 recall TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 1907 74225 2.57e+00 recall TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 524 74225 7.06e-01 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 1048 74225 1.41e+00 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 636 74225 8.57e-01 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 734 74225 9.89e-01 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 444 74225 5.98e-01 recall TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 52175 74225 7.03e+01 recall TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 30940 74225 4.17e+01 recall TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 51692 74225 6.96e+01 recall TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 55016 74225 7.41e+01 recall TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 42392 74225 5.71e+01 recall TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 38363 74225 5.17e+01 recall TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP 74225 74225 1.00e+02 recall ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP

ChromHMM annotation of sample peaks found in reference peaks.

Overlap: Reference peaks in Sample peaks

Percentage of Reference peaks found in Sample peaks (Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP)

query subject overlap total Percentage type peaklist1 peaklist2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 1128 74225 1.52e+00 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 76 74225 1.02e-01 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 8 74225 1.08e-02 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 48599 74225 6.55e+01 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 8 74225 1.08e-02 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 29 74225 3.91e-02 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR 15 74225 2.02e-02 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR 1252 74225 1.69e+00 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR 3 74225 4.04e-03 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR 4 74225 5.39e-03 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR 514 74225 6.92e-01 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR 25 74225 3.37e-02 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR 28 74225 3.77e-02 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR 21669 74225 2.92e+01 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR 5 74225 6.74e-03 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR 565 74225 7.61e-01 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR 20 74225 2.69e-02 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR 184 74225 2.48e-01 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR 25362 74225 3.42e+01 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR 68 74225 9.16e-02 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR 107 74225 1.44e-01 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR 9 74225 1.21e-02 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR 7 74225 9.43e-03 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR 27352 74225 3.69e+01 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR 4 74225 5.39e-03 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR 27 74225 3.64e-02 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR 5 74225 6.74e-03 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR 2 74225 2.69e-03 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR 25088 74225 3.38e+01 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR 4 74225 5.39e-03 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 333 74225 4.49e-01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 2666 74225 3.59e+00 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 753 74225 1.01e+00 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 465 74225 6.26e-01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 144 74225 1.94e-01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 3654 74225 4.92e+00 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 1907 74225 2.57e+00 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 524 74225 7.06e-01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 1048 74225 1.41e+00 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 636 74225 8.57e-01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 734 74225 9.89e-01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 444 74225 5.98e-01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 52175 74225 7.03e+01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 30940 74225 4.17e+01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 51692 74225 6.96e+01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 55016 74225 7.41e+01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 42392 74225 5.71e+01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 38363 74225 5.17e+01 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP 74225 74225 1.00e+02 precision ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 875 26854 3.26e+00 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 73 38766 1.88e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 11 4831 2.28e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 50744 195749 2.59e+01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 12 14851 8.08e-02 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27me3_ENCFF049HUP 37 32323 1.14e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 14 6620 2.11e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 878 22293 3.94e+00 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 3 4318 6.95e-02 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 4 6031 6.63e-02 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 367 10410 3.53e+00 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 16 5649 2.83e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 20 3760 5.32e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 17786 64898 2.74e+01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 5 3815 1.31e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 395 8742 4.52e+00 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 16 6542 2.45e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 120 6983 1.72e+00 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 19899 73210 2.72e+01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 48 6120 7.84e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 65 7993 8.13e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 9 6150 1.46e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6 5751 1.04e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 21468 77407 2.77e+01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 3 6714 4.47e-02 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 18 8071 2.23e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 4 4579 8.74e-02 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 2 3626 5.52e-02 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 19818 68900 2.88e+01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 4 3432 1.17e-01 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27me3_ENCFF049HUP 284 61319 4.63e-01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27me3_ENCFF049HUP 1996 116056 1.72e+00 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP 571 77739 7.35e-01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP 373 68557 5.44e-01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27me3_ENCFF049HUP 137 42023 3.26e-01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27me3_ENCFF049HUP 2673 121225 2.20e+00 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27me3_ENCFF049HUP 1427 103655 1.38e+00 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27me3_ENCFF049HUP 427 75844 5.63e-01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27me3_ENCFF049HUP 883 88756 9.95e-01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27me3_ENCFF049HUP 572 69204 8.27e-01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27me3_ENCFF049HUP 585 82810 7.06e-01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27me3_ENCFF049HUP 377 73221 5.15e-01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27me3_ENCFF049HUP 22637 66293 3.41e+01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27me3_ENCFF049HUP 20269 66045 3.07e+01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27me3_ENCFF049HUP 23163 78782 2.94e+01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27me3_ENCFF049HUP 24142 85662 2.82e+01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27me3_ENCFF049HUP 23547 81418 2.89e+01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27me3_ENCFF049HUP 22279 78827 2.83e+01 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP 74225 74225 1.00e+02 recall ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP

ChromHMM annotation of reference peaks found in sample peaks.

Unique: Sample peaks not in Reference peaks

Percentage of sample peaks not found in reference peaks (Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP)

query subject overlap total Percentage type peaklist1 peaklist2
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 25979 26854 96.7 precision C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 38693 38766 99.8 precision C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 4820 4831 99.8 precision C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 145005 195749 74.1 precision C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 14839 14851 99.9 precision C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27me3_ENCFF049HUP 32286 32323 99.9 precision C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 6606 6620 99.8 precision C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 21415 22293 96.1 precision C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 4315 4318 99.9 precision C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 6027 6031 99.9 precision C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 10043 10410 96.5 precision C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 5633 5649 99.7 precision C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 3740 3760 99.5 precision C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 47112 64898 72.6 precision C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 3810 3815 99.9 precision C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 8347 8742 95.5 precision C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6526 6542 99.8 precision C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6863 6983 98.3 precision C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 53311 73210 72.8 precision C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6072 6120 99.2 precision C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 7928 7993 99.2 precision C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6141 6150 99.9 precision C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 5745 5751 99.9 precision C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 55939 77407 72.3 precision C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6711 6714 100.0 precision C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 8053 8071 99.8 precision C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 4575 4579 99.9 precision C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 3624 3626 99.9 precision C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 49082 68900 71.2 precision C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 3428 3432 99.9 precision C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27me3_ENCFF049HUP 61035 61319 99.5 precision TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27me3_ENCFF049HUP 114060 116056 98.3 precision TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP 77168 77739 99.3 precision TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP 68184 68557 99.5 precision TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27me3_ENCFF049HUP 41886 42023 99.7 precision TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27me3_ENCFF049HUP 118552 121225 97.8 precision TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27me3_ENCFF049HUP 102228 103655 98.6 precision TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27me3_ENCFF049HUP 75417 75844 99.4 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27me3_ENCFF049HUP 87873 88756 99.0 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27me3_ENCFF049HUP 68632 69204 99.2 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27me3_ENCFF049HUP 82225 82810 99.3 precision TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27me3_ENCFF049HUP 72844 73221 99.5 precision TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27me3_ENCFF049HUP 43656 66293 65.9 precision TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27me3_ENCFF049HUP 45776 66045 69.3 precision TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27me3_ENCFF049HUP 55619 78782 70.6 precision TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27me3_ENCFF049HUP 61520 85662 71.8 precision TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27me3_ENCFF049HUP 57871 81418 71.1 precision TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27me3_ENCFF049HUP
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27me3_ENCFF049HUP 56548 78827 71.7 precision TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP 0 74225 0.0 precision ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 73097 74225 98.5 recall C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 74149 74225 99.9 recall C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 74217 74225 100.0 recall C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 25626 74225 34.5 recall C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 74217 74225 100.0 recall C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 74196 74225 100.0 recall C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR 74210 74225 100.0 recall C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR 72973 74225 98.3 recall C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR 74222 74225 100.0 recall C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR 74221 74225 100.0 recall C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR 73711 74225 99.3 recall C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR 74200 74225 100.0 recall C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR 74197 74225 100.0 recall C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR 52556 74225 70.8 recall C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR 74220 74225 100.0 recall C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR 73660 74225 99.2 recall C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR 74205 74225 100.0 recall C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR 74041 74225 99.8 recall C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR 48863 74225 65.8 recall C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR 74157 74225 99.9 recall C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR 74118 74225 99.9 recall C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR 74216 74225 100.0 recall C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR 74218 74225 100.0 recall C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR 46873 74225 63.1 recall C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR 74221 74225 100.0 recall C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR 74198 74225 100.0 recall C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR 74220 74225 100.0 recall C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR 74223 74225 100.0 recall C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR 49137 74225 66.2 recall C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR 74221 74225 100.0 recall C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 73892 74225 99.6 recall TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 71559 74225 96.4 recall TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 73472 74225 99.0 recall TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 73760 74225 99.4 recall TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 74081 74225 99.8 recall TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 70571 74225 95.1 recall TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 72318 74225 97.4 recall TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 73701 74225 99.3 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 73177 74225 98.6 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 73589 74225 99.1 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 73491 74225 99.0 recall TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 73781 74225 99.4 recall TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 22050 74225 29.7 recall TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 43285 74225 58.3 recall TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 22533 74225 30.4 recall TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 19209 74225 25.9 recall TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 31833 74225 42.9 recall TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 35862 74225 48.3 recall TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27me3_ENCFF049HUP
ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP 0 74225 0.0 recall ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP

ChromHMM annotation of sample peaks not found in reference peaks.

Unique: Reference peaks not in Sample peaks

Percentage of reference peaks not found in sample peaks (Reference peakfile: ENCODE_H3K27me3_ENCFF049HUP)

query subject overlap total Percentage type peaklist1 peaklist2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 73097 74225 98.5 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 74149 74225 99.9 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 74217 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 25626 74225 34.5 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 74217 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 74196 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR 74210 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR 72973 74225 98.3 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR 74222 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR 74221 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR 73711 74225 99.3 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR 74200 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR 74197 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR 52556 74225 70.8 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR 74220 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR 73660 74225 99.2 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR 74205 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR 74041 74225 99.8 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR 48863 74225 65.8 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR 74157 74225 99.9 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR 74118 74225 99.9 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR 74216 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR 74218 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR 46873 74225 63.1 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR 74221 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR 74198 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR 74220 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR 74223 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR 49137 74225 66.2 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR 74221 74225 100.0 precision ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 73892 74225 99.6 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 71559 74225 96.4 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 73472 74225 99.0 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 73760 74225 99.4 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 74081 74225 99.8 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 70571 74225 95.1 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 72318 74225 97.4 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 73701 74225 99.3 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 73177 74225 98.6 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 73589 74225 99.1 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 73491 74225 99.0 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 73781 74225 99.4 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 22050 74225 29.7 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 43285 74225 58.3 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 22533 74225 30.4 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 19209 74225 25.9 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 31833 74225 42.9 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 35862 74225 48.3 precision ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP 0 74225 0.0 precision ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP
C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 25979 26854 96.7 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976151_Abcam-ab177178_1_100_MACS2
C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 38693 38766 99.8 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976152_Abcam-ab4729_1_100_MACS2
C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 4820 4831 99.8 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976153_Active_Motif_39133_1_100_MACS2
C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 145005 195749 74.1 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976154_CST9733_1_100_MACS2
C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2 ENCODE_H3K27me3_ENCFF049HUP 14839 14851 99.9 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976155_Diagenode_C15410196_1_100_MACS2
C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2 ENCODE_H3K27me3_ENCFF049HUP 32286 32323 99.9 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976156_Diagenode_C15410196_1_50_MACS2
C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 6606 6620 99.8 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976157_Abcam-ab177178_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 21415 22293 96.1 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976158_Abcam-ab4729_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 4315 4318 99.9 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976159_Diagenode_C15410196_1_100_TSA_SEACR
C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR ENCODE_H3K27me3_ENCFF049HUP 6027 6031 99.9 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976160_Diagenode_C15410196_1_50_TSA_SEACR
C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 10043 10410 96.5 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976161_Abcam-ab177178_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 5633 5649 99.7 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976162_Abcam-ab4729_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 3740 3760 99.5 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976163_Active_Motif_39133_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 47112 64898 72.6 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976164_CST9733_1_100_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 3810 3815 99.9 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976165_Diagenode_C15410196_1_50_11PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 8347 8742 95.5 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976166_Abcam-ab177178_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6526 6542 99.8 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976167_Abcam-ab4729_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6863 6983 98.3 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976168_Active_Motif_39133_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 53311 73210 72.8 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976169_CST9733_1_100_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6072 6120 99.2 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976170_Diagenode_C15410196_1_50_11PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 7928 7993 99.2 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976171_Abcam-ab177178_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6141 6150 99.9 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976172_Abcam-ab4729_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 5745 5751 99.9 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976173_Active_Motif_39133_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 55939 77407 72.3 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976174_CST9733_1_100_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 6711 6714 100.0 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976175_Diagenode_C15410196_1_50_13PCR_SDS_downsampled_SEACR
C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 8053 8071 99.8 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976176_Abcam-ab177178_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 4575 4579 99.9 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976177_Abcam-ab4729_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 3624 3626 99.9 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976178_Active_Motif_39133_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 49082 68900 71.2 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976179_CST9733_1_100_13PCR_column_downsampled_SEACR
C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR ENCODE_H3K27me3_ENCFF049HUP 3428 3432 99.9 recall ENCODE_H3K27me3_ENCFF049HUP C&T/R.H3K27ac.GSM5976180_Diagenode_C15410196_1_50_13PCR_column_downsampled_SEACR
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1 ENCODE_H3K27me3_ENCFF049HUP 61035 61319 99.5 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R1
TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2 ENCODE_H3K27me3_ENCFF049HUP 114060 116056 98.3 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_1_05_jan_2022.S_1_R2
TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP 77168 77739 99.3 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_03_feb_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1 ENCODE_H3K27me3_ENCFF049HUP 68184 68557 99.5 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_4_R1
TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1 ENCODE_H3K27me3_ENCFF049HUP 41886 42023 99.7 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_2_28_jan_2022.S_6_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1 ENCODE_H3K27me3_ENCFF049HUP 118552 121225 97.8 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_11_R1
TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1 ENCODE_H3K27me3_ENCFF049HUP 102228 103655 98.6 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_3_18_feb_2022.S_9_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1 ENCODE_H3K27me3_ENCFF049HUP 75417 75844 99.4 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s11_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1 ENCODE_H3K27me3_ENCFF049HUP 87873 88756 99.0 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s6_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1 ENCODE_H3K27me3_ENCFF049HUP 68632 69204 99.2 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s8_R1
TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1 ENCODE_H3K27me3_ENCFF049HUP 82225 82810 99.3 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Abcam.phase_4_24_mar_2022.s9_R1
TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1 ENCODE_H3K27me3_ENCFF049HUP 72844 73221 99.5 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27ac.Diagenode.phase_2_28_jan_2022.S_2_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1 ENCODE_H3K27me3_ENCFF049HUP 43656 66293 65.9 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_3_R1
TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1 ENCODE_H3K27me3_ENCFF049HUP 45776 66045 69.3 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_2_28_jan_2022.S_5_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1 ENCODE_H3K27me3_ENCFF049HUP 55619 78782 70.6 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_10_R1
TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1 ENCODE_H3K27me3_ENCFF049HUP 61520 85662 71.8 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_3_18_feb_2022.S_8_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1 ENCODE_H3K27me3_ENCFF049HUP 57871 81418 71.1 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s1_R1
TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1 ENCODE_H3K27me3_ENCFF049HUP 56548 78827 71.7 recall ENCODE_H3K27me3_ENCFF049HUP TIP-seq.H3K27me3.CellSignaling.phase_4_24_mar_2022.s4_R1
ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP 0 74225 0.0 recall ENCODE_H3K27me3_ENCFF049HUP ENCODE_H3K27me3_ENCFF049HUP

ChromHMM annotation of reference peaks not found in sample peaks.


3.2 ChIPseeker

EpiCompare uses ChIPseeker::annotatePeak() to annotate peaks with the nearest gene and genomic regions where the peak is located. The peaks are annotated with genes taken from human genome annotations (hg19 or hg38) provided by Bioconductor.


3.3 Functional Enrichment Analysis

EpiCompare performs KEGG pathway and GO enrichment analysis using clusterProfiler. ChIPseeker::annotatePeak() is first used to assign peaks to nearest genes. Biological themes amongst the genes are identified using ontologies (KEGG and GO). The peaks are annotated with genes taken from annotations of human genome (hg19 or hg38) provided by Bioconductor.


KEGG


GO


3.4 Peak Frequency around TSS

This plots peaks that are mapping to transcriptional start sites (TSS). TSS regions are defined as the flanking sequence of the TSS sites. The frequency of peaks in downstream (-3000bp) and upstream (+3000bp) of TSS is plotted. Faint color line around the main frequency line represents the 95% confidence interval estimated by bootstrap method.

## >> Running bootstrapping for tag matrix...        2022-06-08 17:36:54 
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## >> Running bootstrapping for tag matrix...        2022-06-08 18:29:11 
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## >> Running bootstrapping for tag matrix...        2022-06-08 18:36:13 
## >> Running bootstrapping for tag matrix...        2022-06-08 19:23:42 
## >> Running bootstrapping for tag matrix...        2022-06-08 22:21:48 
## >> Running bootstrapping for tag matrix...        2022-06-08 22:28:55 
## >> Running bootstrapping for tag matrix...        2022-06-08 23:32:16

4. Session Info

## R version 4.2.0 (2022-04-22)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Monterey 12.3.1
## 
## Matrix products: default
## LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
## 
## locale:
## [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
## 
## attached base packages:
## [1] stats4    stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] rtracklayer_1.56.0   GenomicRanges_1.48.0 GenomeInfoDb_1.32.2  IRanges_2.30.0       S4Vectors_0.34.0    
## [6] BiocGenerics_0.42.0  EpiCompare_0.99.20   PeakyFinders_0.99.1 
## 
## loaded via a namespace (and not attached):
##   [1] utf8_1.2.2                              reticulate_1.25                        
##   [3] R.utils_2.11.0                          tidyselect_1.1.2                       
##   [5] htmlwidgets_1.5.4                       RSQLite_2.2.14                         
##   [7] AnnotationDbi_1.58.0                    grid_4.2.0                             
##   [9] BiocParallel_1.30.3                     scatterpie_0.1.7                       
##  [11] munsell_0.5.0                           codetools_0.2-18                       
##  [13] colorspace_2.0-3                        GOSemSim_2.22.0                        
##  [15] Biobase_2.56.0                          filelock_1.0.2                         
##  [17] highr_0.9                               knitr_1.39                             
##  [19] MACSr_1.4.0                             rstudioapi_0.13                        
##  [21] DOSE_3.22.0                             labeling_0.4.2                         
##  [23] MatrixGenerics_1.8.0                    GenomeInfoDbData_1.2.8                 
##  [25] polyclip_1.10-0                         seqPattern_1.28.0                      
##  [27] bit64_4.0.5                             farver_2.1.0                           
##  [29] downloader_0.4                          rprojroot_2.0.3                        
##  [31] basilisk_1.8.0                          vctrs_0.4.1                            
##  [33] treeio_1.20.0                           generics_0.1.2                         
##  [35] xfun_0.31                               BiocFileCache_2.4.0                    
##  [37] regioneR_1.28.0                         R6_2.5.1                               
##  [39] graphlayouts_0.8.0                      locfit_1.5-9.5                         
##  [41] bitops_1.0-7                            BRGenomics_1.8.0                       
##  [43] cachem_1.0.6                            fgsea_1.22.0                           
##  [45] gridGraphics_0.5-1                      DelayedArray_0.22.0                    
##  [47] assertthat_0.2.1                        vroom_1.5.7                            
##  [49] promises_1.2.0.1                        BiocIO_1.6.0                           
##  [51] scales_1.2.0                            ggraph_2.0.5                           
##  [53] enrichplot_1.16.1                       gtable_0.3.0                           
##  [55] tidygraph_1.2.1                         rlang_1.0.2                            
##  [57] genefilter_1.78.0                       splines_4.2.0                          
##  [59] lazyeval_0.2.2                          impute_1.70.0                          
##  [61] GEOquery_2.64.2                         BiocManager_1.30.18                    
##  [63] yaml_2.3.5                              reshape2_1.4.4                         
##  [65] crosstalk_1.2.0                         GenomicFeatures_1.48.3                 
##  [67] httpuv_1.6.5                            qvalue_2.28.0                          
##  [69] clusterProfiler_4.4.2                   tools_4.2.0                            
##  [71] gridBase_0.4-7                          ggplotify_0.1.0                        
##  [73] ggplot2_3.3.6                           ellipsis_0.3.2                         
##  [75] gplots_3.1.3                            jquerylib_0.1.4                        
##  [77] RColorBrewer_1.1-3                      Rcpp_1.0.8.3                           
##  [79] plyr_1.8.7                              progress_1.2.2                         
##  [81] zlibbioc_1.42.0                         purrr_0.3.4                            
##  [83] RCurl_1.98-1.6                          basilisk.utils_1.8.0                   
##  [85] prettyunits_1.1.1                       viridis_0.6.2                          
##  [87] SummarizedExperiment_1.26.1             ggrepel_0.9.1                          
##  [89] here_1.0.1                              magrittr_2.0.3                         
##  [91] data.table_1.14.2                       DO.db_2.9                              
##  [93] matrixStats_0.62.0                      hms_1.1.1                              
##  [95] patchwork_1.1.1                         mime_0.12                              
##  [97] evaluate_0.15                           xtable_1.8-4                           
##  [99] XML_3.99-0.9                            gridExtra_2.3                          
## [101] compiler_4.2.0                          biomaRt_2.52.0                         
## [103] tibble_3.1.7                            KernSmooth_2.23-20                     
## [105] crayon_1.5.1                            shadowtext_0.1.2                       
## [107] R.oo_1.24.0                             htmltools_0.5.2                        
## [109] ggfun_0.0.6                             later_1.3.0                            
## [111] tzdb_0.3.0                              tidyr_1.2.0                            
## [113] geneplotter_1.74.0                      aplot_0.1.6                            
## [115] DBI_1.1.2                               genomation_1.28.0                      
## [117] tweenr_1.0.2                            ExperimentHub_2.4.0                    
## [119] ChIPseeker_1.32.0                       dbplyr_2.2.0                           
## [121] MASS_7.3-57                             rappdirs_0.3.3                         
## [123] boot_1.3-28                             Matrix_1.4-1                           
## [125] readr_2.1.2                             piggyback_0.1.3                        
## [127] cli_3.3.0                               R.methodsS3_1.8.1                      
## [129] parallel_4.2.0                          igraph_1.3.1                           
## [131] pkgconfig_2.0.3                         TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
## [133] GenomicAlignments_1.32.0                dir.expiry_1.4.0                       
## [135] plotly_4.10.0                           xml2_1.3.3                             
## [137] ggtree_3.4.0                            annotate_1.74.0                        
## [139] bslib_0.3.1                             XVector_0.36.0                         
## [141] yulab.utils_0.0.4                       stringr_1.4.0                          
## [143] digest_0.6.29                           Biostrings_2.64.0                      
## [145] rmarkdown_2.14                          fastmatch_1.1-3                        
## [147] tidytree_0.3.9                          restfulr_0.0.14                        
## [149] curl_4.3.2                              gtools_3.9.2.1                         
## [151] shiny_1.7.1                             Rsamtools_2.12.0                       
## [153] rjson_0.2.21                            lifecycle_1.0.1                        
## [155] nlme_3.1-157                            jsonlite_1.8.0                         
## [157] viridisLite_0.4.0                       limma_3.52.1                           
## [159] BSgenome_1.64.0                         fansi_1.0.3                            
## [161] pillar_1.7.0                            lattice_0.20-45                        
## [163] plotrix_3.8-2                           KEGGREST_1.36.0                        
## [165] fastmap_1.1.0                           httr_1.4.3                             
## [167] survival_3.3-1                          GO.db_3.15.0                           
## [169] interactiveDisplayBase_1.34.0           glue_1.6.2                             
## [171] UpSetR_1.4.0                            png_0.1-7                              
## [173] BiocVersion_3.15.2                      bit_4.0.4                              
## [175] sass_0.4.1                              ggforce_0.3.3                          
## [177] stringi_1.7.6                           blob_1.2.3                             
## [179] org.Hs.eg.db_3.15.0                     DESeq2_1.36.0                          
## [181] AnnotationHub_3.4.0                     caTools_1.18.2                         
## [183] memoise_2.0.1                           dplyr_1.0.9                            
## [185] ape_5.6-2